home / Zohre Kurt, Ph.D.

At KurtLab, created and led by Dr. Zohre Kurt, we study microbial processes to understand the biological activity in the environment focusing on the decontamination of toxic chemicals. We combine engineering and computational tools with molecular, biochemical, and analytical techniques to engineer sustainable treatment technologies that convert waste into usable resources.

bio / Zohre Kurt, Ph.D.

Languages
English,
Turkish,
Bulgarian,
German,
Spanish





Current Positions

Associate Professor (entitled in October 2022)

Adjunct faculty Florida State University, Panama (since August 2016).

Specialist United Nations Development Program, Turkey, project: Identification and Remediation of Contaminated Sites with Persistent Organic Pollutants (since May 2021)

Consultant Engineering Works Corp. Panama City, Panama (since June 2017) Agrofino, Panama City, Panama (since November 2015) (INDICASAT-AIP).

Researcher Urban Risk Center, Florida State University, Panama (since March 2017)

Education

Ph.D. Georgia Institute of Technology, Atlanta, GA, USA (2012); Environmental Engineering

M.S., Georgia Institute of Technology, Atlanta, GA, USA (2011); Chemical and Biomolecular Engineering

B.S., Georgia Institute of Technology, Atlanta, GA, USA (2008); Environmental Engineering

B.S., Middle East Technical University, Ankara, Turkey (2007); Chemical Engineering

B.S., Middle East Technical University, Ankara, Turkey (2006); Environmental Engineering

Work Experience

Assistant Professor
Middle East Technical University, Environmental Engineering, Ankara, Turkey (October 2017-October 2022 )

Adjunct Faculty
Institute of Scientific Research and High Technology Services (INDICASAT), Panama City, Panama (April 2016 - August 2022)

Visiting professor
Master’s program in Mechanical Engineering, Technological University of Panama, Panama City, Panama (March 2016- July 2018)

Laboratory Manager Georgia Institute of Technology, GA, USA (February - August 2013)

PostdoctoralFellow Georgia Institute of Technology, GA, USA (January 2013- November 2015

Adviser Current Protocols Advisory Panel, NJ, USA (June 2009-December 2017

Graduate Assistant Georgia Institute of Technology, Atlanta, GA, USA (May 2008- December 2012)

Teaching Assistant Environmental Engineering Department, Middle East Technical University, Ankara, Turkey (September 2006- July 2007)

Teaching

Middle East Technical University
Graduate Classes
Environmental Biotechnology (ENVE 532)
This class teaches about advanced biological reactors, enzyme reactors, treatment with immobilized cells and enzymes, biodegradation of unusual compounds and tests for biodegradability, effect of metals on biological kinetics, biological recycling of mineral wastes and residues, thermophilic microorganisms, and their application to waste treatment.

Advanced Biological Treatment (ENVE 535) This class reviews biological treatment processes and the new advances in the field. Mechanism, kinetics, and microbiology of nutrient removing activated sludge is modelled via IAWQ taskgroup models for nutrient removing active sludge. Calibration techniques for the Task group models and hands-on practice with SSSP and ASIM computer models is the core of the individual term project for this course. Microbiology of bulking and population dynamics of activated sludge in sequencing batch, GAC and PAC activated sludge are some of the topics that have been covered in the course.

Undergraduate Classes
Environmental Toxicology (ENVE 491)
This is a technical elective class. Topics of this class include cultural, economic, and policy context of environmental toxicology, major historical toxicological events, occurrence, exposure, modes of toxic action, target factors, biotransformation, dose-response and toxicity testing.

Students learn about Quantitative toxicology and quantitative structure activity relationship (QSAR) and defense responses. Classes of toxicants and major examples are also reviewed in the class including mutagens, endocrine disruption.

Environmental Engineering Design-1 (ENVE 407) This is a project-based class required for graduation of the program. Concepts in engineering design, engineering ethics, principles of project management, environmental legal infrastructure, treatment plant processes, plant hydraulics and sludge handling, application of environmental engineering principles on open ended design problem software application in process selection and design are the topics of the class.

Environmental Engineering Design-2 (ENVE 408) This is a project-based class required for graduation of the program. It’s a continuation of ENVE 407. The topics include tender management, safety and economic considerations in engineering design, cost analysis and project evaluation, detailed design applicable to the problem, completion of a design project in teams with a final report and presentation.

Transport Processes in Environmental Engineering (ENVE 322)
This is a must course that explains reactive and nonreactive environmental processes. It includes the topics explaining mass transport processes in environmental media - air, water and soil, heat transport, mass transfer and transformation processes. The course includes development of governing equations for combinations of transport, transfer and transformation processes in environmental systems. Computational aspects of environmental mass and heat transport processes are also covered during the class.

Water Supply and Urban Drainage (ENVE 312) The class focuses on water and sewage management. The topics of the class include sources of water, population estimation, water demand/use and wastewater generation, water transmission, water distribution components, pumps and design of water distribution systems, components and characteristics of sewage, sewer appurtenances and special structures, design principles of sanitary, storm and combined sewers, hydraulics and design of sewers and stormwater management.

Florida University
General Chemistry (CHM 1045)
The aim of this class is to give the students an enhanced level of understanding of moderately complex chemical phenomena. The lecture shall cover, in an interactive way, the use of chemical symbols, formulas and equations; the states of matter; electronic structure, chemical bonding, gas laws, and thermo-chemistry. In addition the class includes an analysis of the differences between precipitation, neutralization and oxidation-reduction reactions and the students will learn how to use the solubility rules for the prediction of precipitation reactions and the rules for the determination of oxidation states of elements present in a chemical compound.

General Chemistry Laboratory (CHM 1045L) Topics include the application to chemical analysis of stoichiometric calculations, determination of atomic spectra, qualitative and quantitative evaluation of chemical reactions (neutralization, redox and acid-base reactions), limiting reactant and molecular geometry. The course aims to teach students the basic skills and techniques of a general chemistry laboratory, as well as to bring the necessary elements to understand how to work under safe and quality assured working practices. The class uses either or on bench or online application tools for the experiments.

General Chemistry 2 (CHM 1046) This course is designed for higher chemistry education assuming that students did understand the concepts explained in Chemistry I. The course requires students to build up their learning cumulatively. The course will review chemical theories related to the chemical bonds, the concepts of intermolecular forces of liquids and solids, the properties of solutions, the kinetics of chemistry, the chemical equilibriums including acid-base and aqueous ionic equilibrium, free energy of thermodynamics, electrochemistry, radioactivity and nuclear chemistry.

General Chemistry 2 Laboratory (CHM 1046L) This course gives a chance to students to do more advanced experiments than covered in previous classes. Topics include chemical equilibrium, chemical kinetics, intermolecular forces, gas law, titration chemistry, spectrophotometry, cation and anion analysis, entropy and electrochemistry.

Chemistry for Liberal Studies (CHM 1020) This course presents an overview of modern chemistry with emphasis on basic concepts that could be applied to the general understanding of the process that govern our daily lives. Interactive workshops and daily-based examples are the basis of this course learning methodologies. Both methods aim to help the student learn how to think about matter from the perspectives of in-class analysis and discussions of actual societal topics.

Chemistry for Liberal Studies Laboratory (CHM 1020L) This class introduces basic tools in a chemical laboratory. Topics include quantitative observations, and analysis of the physical and chemical properties of matter as well as physical and chemical separation of mixtures. The course aims to teach how scientific information can be collected and validated via application of appropriate laboratory practices.

Technical University of Panama
Graduate classes:

Regression and Experimental Analysis
This is a class provided in the only ABET accredited master’s program of Mechanical Engineering. Topics include fundamentals of the techniques most frequently used in experimental sciences, regression and experimental design, regression and simple correlation, verifying assumptions, matrix notation, statistical tests, multivariate analysis, criteria for grouping data, hierarchical cluster analysis, ligation strategies, linear models with categorical variables, levels of a factor, test square means, global F test, posteriori criteria: t test or other, validation of model assumptions, variable transformation, utilization for orthogonal polynomials trend analysis when the level has quantitative factors and factorial experiments.

Instrumental Analysis This is a class provided in the only ABET accredited master’s program of Mechanical Engineering. The topics of this class include basics of metrology, statistical methods for analysis, analog electronics, elementary circuit analysis, signal modification by filters, operational amplifiers, digital electronics, sampling, Alias. DAC. ADC, spectrometry including UV/Visible spectrometry, luminescence spectrometry such as fluorescence and phosphorescence, infrared spectrometry, Raman spectrometry, mass spectrometry and X-ray spectrometry. The theory of molecular analytes, mass analyzers, and detectors are also a part of the class.

Georgia Institute of Technology (as guest lecturer)
Graduate classes:
Biotransformation of Xenobiotic Chemicals (CEE 6351)
The course topics include biotransformation pathways and kinetics of anthropogenic recalcitrant compounds and biological, biochemical, and environmental factors affecting these transformations in natural and engineered systems.

Undergraduate classes:
Environmental Engineering Principles (CEE 2300)
The course topics include introduction to chemical, biological, and physical processes in the environment. Discussion of the basic processes governing air, water, and land quality, and the behavior and impacts of contaminants associated with human and industrial activities.

Projects / Zohre Kurt, Ph.D.


Optimizing micro-algae cultivation from waste with a continuous reactor to produce sustainable fuel

Supported by Middle East Technical University BAP grant (TL-60K) (since 2021)

The project developed and optimized a continuous field reactor to grow algae with real domestic wastewater for campus application

The effects of biofilm formation on microplastic’s settling

Supported by BAGEP (TL-40K) (2020-2022)

This project revealed the effects of biofilm formation focusing on EPS development to explain how this will affect the microplastic accumulation in the environment by measuring settling velocity by image tracing.

Sustainable wastewater treatment with biofuel production

Supported by UNESCO-Loreal (TL-75K) (2019)

The product of the project is an isolated microalga specie from the local WWTP that could decrease the nutrient levels of wastewater to the levels of irrigation water and whose biomass could be used for biofuel production.

Solar Twins : Life cycle assessment of solar desalination processes

Supported by HORIZON2020

This project modeled a solar desalination plant in North Cyprus using real data and evaluating its effects by comparing the alternative ways to get drinking water.

Use of agricultural waste for the improvement of the physico-chemical properties of the soil in crop areas

Supported by SENACYT ($ 150K) (2019-2022)(INDICASAT-AIP).

The project evaluated the application of biochar obtained from an invasive species in the Panama Canal area on the soil of Panama. The results revealed that biochar could improve soil quality.

Remediation of pesticides via natural attenuation

Supported by TUBITAK 2232

Pesticides found in the river basins of Turkey were evaluated for their biodegradability and the limitations of their biodegradation were revealed.

Evaluating and modeling atrazine degradation

Supported by Middle East Technical University BAP grant (TL-55K) (2018-2021)

The project evaluated the atrazine degradability in the field even after banning its usage for more than a decade, the results showed that there is still a potential for its biodegradation and that recirculation of atrazine-contaminated water rather than passing it to the bioreactors would be more effective to treat it.

Identification a strategy for cleaning the contaminated water in the District of Santa Isabel, Colón

Supported by Inter-American Development Bank and SENACYT ($ 200K) (2018-2022

Methodology to estimate water quality in rural areas of Panama was established, educational programs were developed and a coconut waste-based biochar, its preparation, and its application were explained to the low-income rural communities to create access to clean drinking water.

Biodegradation of toxic chemicals as a basis of natural attenuation

Supported by Dupont ($ 536K) (2015-2016)

The concept of biodegradation capacity in the capillary fringe was revealed as a result of this study and the limitations of the biodegradation were explained.

Mining from desalination waste: Uranium recovery from brine

Supported by SNI (2017-2020)

The possibility of mining uranium from solar desalination brine was evaluated in this project using different types of adsorbents.

Team



Collaborating Institutions
BAGEP: https://bilimakademisi.org/bagep-2020-odul-kazananlar/
FSU: https://panama.fsu.edu/person/zohre-kurt
FSU-URC: https://urbanriskcenter.org/zohre-kurt/
ESRI: https://www.esri.co/es-pa/home
GUNAM: https://odtugunam.org/
INDICASAT: https://indicasat.org.pa/?lang=en
METU: https://www.metu.edu.tr/tr
SNI: https://www.senacyt.gob.pa/sistema-nacional-de-investigacion-sni/
UNESCO: https://www.unesco.org/en/articles/2022-calls-applications-loreal-u
nesco-womenscience-ayoung-talents-programmes

UNDP: https://www.undp.org/turkiye/projects/identification-and-remediation
-contaminatedsites-persistent-organic-pollutants-pops-project

UTP: https://utp.ac.pa/
Collaborating Industries
Agrofino: https://www.instagram.com/agrofino/?hl=en
Engineering works: http://enworkscorp.com/
Dupont: https://www.dupont.com/personal-protection/decontamination-reme
diation.html

L’Oreal: https://brandstorm.loreal.com/en
Project Researcher
Jorlanys Cordoba
Graduate Students
Guray Hatipoglu - Thesis: Modeling contaminated groundwater with nitrate
and pesticides to be used as pipe and use in agriculture, 2018.
Ilayda Sipahi - Thesis: Transportation and recycling effects on the household
textile waste of Eskisehir using LCA, 2021.
Bahar Evren - Thesis: The effect of biofilm formation on the settling velocity
of microplastics in freshwater and seawater, 2022.
Melike Benan Altay - Thesis: Comparative life cycle assessment of uranium
recovery from brine, 2022.
Merve Kokangul - The biodegradation pathway of cypermethrin, 2022
Carlos Carbone - Thesis: Swarm control system for crop inspection using
quadrotors, 2018 (coadvised).
Sevgi Deniz Akdemir – Thesis: Opportunities and barriers for the application
of solar heat for industrial processes technologies to Turkish industrial parks,
2021 (co-advised).
Undergraduate Students: Ceyda Kalipcioglu, Berat Yurtsever, Irmak Ozdemir,
Ece Tan, Idil Kayan, Ali Burak Kilic

Publications / Zohre Kurt, Ph.D.

ORCID-ID: 0000-0001-8862-5846
Google Scholar: https://scholar.google.com/citations?user=a60wPnMAAAAJ&hl=en

Peer-reviewed journal papers

Kurt, Z.* , Ozdemir I and A. James. Effectiveness of microplastics removal in wastewater
treatment plants: A critical analysis of wastewater treatment processes, Journal of
Environmental Chemical Engineering, 2022,107831.

https://www.sciencedirect.com/science/article/abs/pii/S2213343722007047


Altay, M. B., Kalıpçıo ğ lu, C and Z. Kurt. Comparative Life Cycle Assessment of Uranium Recovery from Brine, Resources, Conservation and Recycling, 2022, 181, 106237.

https://www.sciencedirect.com/science/article/abs/pii/S0921344922000854

Z. Kurt. “Sustainable Remediation of Atrazine in Agricultural Fields by Reusing
Contaminated Water for Irrigation”, Sakarya Universitesi Muhendislik Fakultesi Bilim
Dergisi, 2022, 26, 1, 136-148. (as a tenure track requirement)

http://www.saujs.sakarya.edu.tr/en/pub/issue/67934/955012


Dávila-Santiago, L., DeLeon-Rodriguez, N., LaSanta-Pagán, K., Hatt, J. K., Kurt, Z.,
Massol-Deyá, A., & Konstantinidis, K. T. Microbial diversity in a military impacted lagoon
(Vieques, Puerto Rico) and description of “Candidatus Biekeibacterium resiliens” gen. nov.,
sp. nov. comprising a new bacterial family”, Systematic and Applied Microbiology, 2022,
45(1), 126288.

https://www.sciencedirect.com/science/article/abs/pii/S0723202021001119


Sanchez-Galan JE, Ureña G, Escovar LF, Fabrega-Duque JR, Coles A, Kurt Z. Challenges to Detect SARS-CoV-2 on Environmental Media, the Need and Strategies to Implement the Detection Methodologies in Wastewaters, Journal of Environmental Chemical Engineering, 2021, 105881.

https://pubmed.ncbi.nlm.nih.gov/34221893/

Ri-Qing Yu, Z. Kurt, F. He, and J. Spain."Biodegradation of the Allelopathic Chemical, Pterostilbene, by Sphingobium sp. from Peanut Rhizosphere" , Appl. Environ. Microbiol., 2019, 85.5, 2154-18.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6384101/

G. Hatipoglu and Z. Kurt. “Modeling of Irrigation with Nitrate Contaminated Groundwater”.
Pamukkale Universitesi Muhendislik Fakultesi Bilim Dergisi, 2019, 2100, 1000, (1000). (as a
tenure track requirement)

http://pajes.pau.edu.tr/en/jvi.aspx?un=PAJES-38963&volume=26&issue=3


L. Dávila-Santiago, N. DeLeon-Rodriguez, K. LaSanta-Pagán, J. Hatt, Z. Kurt, A.
Massol-Deyá, and K. Konstantinidis. “Microbial Diversity in a Military Impacted Lagoon
(Vieques, Puerto Rico) as Revealed by Metagenomics” bioRxiv ,2018, 389379.

https://www.biorxiv.org/content/10.1101/389379v1


Z. Kurt, M. Minoia and J. C. Spain. Resveratrol as a growth substrate for bacteria from the
rhizosphere, Applied and environmental microbiology, 2018, 84, 104-18.

https://pubmed.ncbi.nlm.nih.gov/29523548/


Carbone, Carlos, Oscar Garibaldi and Z. Kurt. Swarm robotics as a solution to crops
inspection for precision agriculture, KnE Engineering, 2018, 3(1), 552-562.

https://knepublishing.com/index.php/KnE-Engineering/article/view/1459/3522


S. Karthikeyan, Z. Kurt, G. Pandey and J. C. Spain. Immobilized biocatalyst for detection
and destruction of the insensitive explosive, 2,4-dinitroanisole (DNAN), Environmental
Science and Technology, 2016, 50 (20), 11193-11199.

https://pubs.acs.org/doi/10.1021/acs.est.6b03044


Z. Kurt*, E. Erin Mack, J. C. Spain. Natural attenuation of nonvolatile contaminants in the
Capillary Fringe, Environmental Science and Technology, 2016, 50, (18), 10172-10178.

https://pubs.acs.org/doi/full/10.1021/acs.est.6b02525


S. Kalyoncu, D. P. Heaner Jr., Z. Kurt, C. M. Bethel, C. U. Ukachukwu, S. Chakravarthy, J. C.
Spain and R. L. Lieberman. Enzymatic hydrolysis by transition-metal-dependent
nucleophilic aromatic substitution, Nature Chemical Biology, 2016, 12, (12), 1031.

https://www.nature.com/articles/nchembio.2191


J. Luo, Z. Kurt, D. Hou and J. C. Spain. Modeling aerobic biodegradation in the capillary
fringe, Environmental Science and Technology, 2014, 49, (3), 1501-1510.

https://pubs.acs.org/doi/10.1021/es503086p


Z. Kurt, E. E. Mack and J. C. Spain. Biodegradation of cis-dichloroethene and vinyl chloride
in the capillary fringe, Environmental Science and Technology, 2014, 48, (22), 13350-13357.

https://pubs.acs.org/doi/10.1021/es503071m


S. Oh, Z. Kurt, D. Tsementzi, M. R. Weigand, M. Kim, J. Hatt, M. Tandukar, S. G. Pavlostathis,
J. C. Spain, and K. T. Konstantinidis. Microbial community degradation of widely used
quaternary ammonium disinfectants, Applied Environmental Microbiology, 2014, 80, (19),
5892-5900.

https://pubmed.ncbi.nlm.nih.gov/24951783/


Wijker, R., Z. Kurt, J. C. Spain, J. Bolotin, J. Zeyer, and T. Hofstetter. Isotope fractionation
associated with the biodegradation of 2- and 4-nitrophenols via monooxygenation
pathways, Environmental Science and Technology, 2013, 47 (24), 14185-14193.

https://pubs.acs.org/doi/10.1021/es403876u


Z. Kurt and J. C. Spain. Biodegradation of chlorobenzene, 1,2-dichlorobenzene, and
1,4-dichlorobenzene in the vadose zone, Environmental Science and Technology, 2013, 47
(13), 6846-6854.

https://pubs.acs.org/doi/10.1021/es3049465


Z. Kurt, K. H. Shin, and J. C. Spain. Biodegradation of chlorobenzene and nitrobenzene at
interfaces between sediment and water, Environmental Science and Technology, 2012,
46,11829-11835.

https://pubs.acs.org/doi/10.1021/es302897j


Hofstetter, T. B., J. Bolotin, M. Skarpeli-Liati, R. Wijker, Z. Kurt, S. F. Nishino, and J. C.
Spain. Tracking transformation processes of organic micropollutants in aquatic
environments using multi-element isotope fractionation analysis, Applied Geochemistry,
2011, 26, 334-S336.

https://www.sciencedirect.com/science/article/abs/pii/S0883292711001478

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